Tools and Software Packages developed in the Kreutz-Lab
R-Packages:
Name | Description | Link |
| RTF Package | Package for RTF Modelling (DOI: 10.1093) | github.com/kreutz-lab/rtf |
| les | Estimates Loci of Enhanced Significance (LES) in tiling microarray data | https://www.bioconductor.org/packages//2.12/bioc/html/les.html |
| DIMAR | Package for identification of the optimal imputation method | github.com/kreutz-lab/DIMAR |
| zitools | Package for statistical analyses of zero-inflated data | github.com/kreutz-lab/zitools |
| simFrB | Package for simulating benchmark data | github.com/kreutz-lab/simFrB |
| CountSpores | Package for the analysis of hierarchical count data | github.com/kreutz-lab/CountSpores |
| MBQN | Package for normalization of omics data | https://www.bioconductor.org/packages/release/bioc/html/MBQN.html |
MATLAB Tools:
Name | Description | Link |
| Data2Dynamics (d2d) | Software for ODE modelling in MATLAB tailored to parameter estimation in dynamical systems | https://github.com/Data2Dynamics/d2d |
| Rcall | Package for using R in MATLAB | github.com/kreutz-lab/Rcall |
Benchmarking:
Name | Description | Link |
| Benchmarking Wiki | Wiki as a repository for published benchmark studies with opportunity to publish own results. | https://www.benchmarking.uni-freiburg.de/ |
| Benchmarking Models | Collection of ODE models with data for evaluating methodologies for data-based modeling. | https://github.com/Benchmarking-Initiative/Benchmark-Models |
Other Tools:
Name | Description | Link |
| COVID19Surveillance | Agent-based model for finding an optiomal COVID-19 surveillance strategie | github.com/kreutz-lab/COVID19Surveillance |
| Omics characterization | Tool for the quality control of omics data (DOI: 10.21203) | omicscharacterization.imbi.uni-freiburg.de |
Anfahrt/Location (klick on the image):
Address
Institut of Medical Biometry and Statistics
- Methods of Systems Biomedicine / Kreutz-Lab -
Stefan-Meier Str. 26
79104 Freiburg