Team
Prof. Dr. Dr. Melanie Börries
Tel.: 0761 - 270 84671
Melanie.boerries@uniklinik-freiburg.de
Miriam von Scheibner
Tel.: 0761 270-84673
miriam.scheibner@uniklinik-freiburg.de
Dr. Geoffroy Andrieux
Substitution
Junior Group Leader EkoEstMed
Tel.: 0761 270-84678
geoffroy.andrieux@uniklinik-freiburg.de
Expertise:
- NGS analysis (DNAseq, RNAseq, Proteomics, Epigenetics)
- Multi-omics data integration
- Network modeling
- Biomarker identification
- Pipeline development
Affiliation: Member of the MIRACUM https://www.miracum.org/das-konsortium/nachwuchsforschergruppen/ekoestmed/
Ahmad Al Ajami
Postdoctoral Researcher
Tel.: 0761 270-84646
ahmad.al.ajami@uniklinik-freiburg.de
Expertise:
- NGS-Analyse (RNA-, scRNA-, CITE-seq)
- Pipeline development
Dr. Bismark Appiah
Postdoctoral Researcher
Tel.: 0761 270-84683
bismark.appiah@uniklinik-freiburg.de
Expertise:
- NGS analysis - scRNA-seq, RNA-seq.
- Epigenetics
- Cell/molecular biological methods
Andreas Blaumeiser
Member of the Subgroup Molecular Tumor Board
Tel.: 0761 270-84659
andreas.blaumeiser@uniklinik-freiburg.de
Expertise:
- Pipeline Development
Affiliation: Member of the MTB, DKTK https://dktk.dkfz.de/de/home
Dr. Sajib Chakraborty
Postdoctoral Researcher
Member of the Junior Group EkoEstMed
Tel.: 0761 270-84656
sajib.chakraborty@uniklinik-freiburg.de
Expertise:
- Bulk, Single-cell, and Spatial transcriptomics
- Proteomics and Phosphoproteomics analysis (LC-MS/MS, DIA, DDA, SILAC, TMT, Label-free).
- Multiomics Data Integration
- Systems Biology
Dr. Eyleen Corrales
Postdoctoral Researcher
Tel.: 0761 203-9628
eyleen.corrales@uniklinik-freiburg.de
Expertise:
-
NGS-Analyse (RNA-seq, ATAC-seq)
-
Zell- und molekularbiologische Methoden
-
Vorhersage der Zell-Zell-Kommunikation
Tonmoy Das
PhD student
Member of the Junior Group EkoEstMed
Tel.: 0761 270-84664
tonmoy.das@uniklinik-freiburg.de
Expertise:
- NGS data analysis (WES, RNA-seq)
- Multi-omics data integration
- Pipeline development
Maria Hess
PhD student
Member of the Subgroup Molecular Tumor Board
Tel.: 0761 270-84680
maria.elena.hess@uniklinik-freiburg.de
Expertise:
- DNA sequencing
- RNA sequencing
Affiliation: Member of the MTB https://www.uniklinik-freiburg.de/medizin1/behandlung/molekulares-tumorboard.html
Dr. Anselm Hoppmann
Postdoctoral Researcher
0761 270-84664
Anselm.Hoppmann@uniklinik-freiburg.de
Expertise:
- DNA-sequencing
- Pipeline Development
- Software-Architecture
- Databases
Affiliation: Affiliation: Member of the MTB https://www.uniklinik-freiburg.de/cccf/aerzte-fachleute/tumorboards/molekulares-tumorboard.html
Dr. Tobias Hundertmark
Postdoctoral Researcher
Tel.: 0761 270-84645
tobias.hundertmark@uniklinik-freiburg.de
Expertise:
- NGS data analysis (organoids, bacteria)
- Molecular biology
Affilierung: DKTK https://dktk.dkfz.de
Dr. Rhena Klar
Tel: +49 761 203 9628
rhena.klar@uniklinik-freiburg.de
Expertise:
-
primary 3D organoid culture
-
Cell and molecular biology methode
Affiliation: Coordination FreezeO, DKTK https://dktk.dkfz.de/de/home
Silke Kowar
Technical Assistant
Tel.: 0761 203-9619
silke.kowar@uniklinik-freiburg.de
Expertise:
- BTA
- Laboratory assistance/ Laboratory organization
- Molecular biological work
- PDAC/Melanoma/MTB/Prudent
Christopher Krolla
research assistant
Member of the Junior Group EkoEstMed
Tel.: 0761 270-846662
christopher.krolla@uniklinik-freiburg.de
Expertise:
- Machine and Deep Learning (Image, Graph structured, Text, Tabular, Video)
- Image processing
- NGS analysis (DNAseq, RNAseq, Single-Cell)
- Integration of multi-omics data
- Pipeline development
Ariane Lehmann
PhD student
Tel.: 0761 270-84679
ariane.lehmann@uniklinik-freiburg.de
Expertise:
- Lab Expertise
- RNA sequencing
- DNA sequencing
Nawal Madkhali
Doktorandin
Tel.: 0761 203-9619
nawal.madkhali@uniklinik-freiburg.de
Expertise:
- Molekulare Biologie / Immunologie
- Sequenzierung der nächsten Generation
- Gene Editing
Affiliierung: Mitglied im GRAKO http://www.meinbio.uni-freiburg.de/what-is-meinbio
Ralf Mertes
PhD student
Member of the Subgroup Molecular Tumorboard
Phone: +49 (0) 761 270-84693
ralf.mertes@uniklinik-freiburg.de
Expertise:
- Cell and molecular biology laboratory methods
- DNA sequencing
- RNA sequencing
Affiliation: Member of the MTB https://www.uniklinik-freiburg.de/medizin1/behandlung/molekulares-tumorboard.html
Dr. Patrick Metzger, Postdoc
Leader of the Subgroup Molecular Tumor Board
Tel.: 0761 270-84682
patrick.metzger@uniklinik-freiburg.de
Expertise:
- DNA sequencing
- RNA sequencing
- Pipeline Development
Affiliation: Member of the MTB, UE3 MIRACUM https://www.uniklinik-freiburg.de/medizin1/behandlung/molekulares-tumorboard.html https://www.miracum.org/
Dr. Katharina Moos
Postdoc
Tel.: 0761 270-84681
katharina.moos@uniklinik-freiburg.de
Expertise:
- DNA sequencing
- RNA sequencing
Dr. Thomas Pauli, Postdoc
Member of the Subgroup Molecular Tumor Board
Tel.: 0761 270-84685
thomas.pauli@uniklinik-freiburg.de
Expertise:
- DNA sequencing
- RNA sequencing
Senthilkumar Ramamoorthy
Tel.: 0761 270-84674
senthilkumar.ramamoorthy@uniklinik-freiburg.de
Junior Group Leader by Prof.Niemeyer/Ehl group
Michael Rauer
Tel.: 0761 270-84676
michael.rauer@uniklinik-freiburg.de
Expertise:
- Bioinformatics Analysis of Epigenomics and Transcriptomics
- Integrative NGS data Analysis
- Development of Computational Workflows
Aránzazu Sáenz, PhD student
Tel.: 0761 203-9619
aranzazu.saenz.espinoza@uniklinik-freiburg.de
Expertise:
- Molecular biology
- Biochemistry
- Next generation sequencing
Affiliierung: Mitglied im GRAKO http://www.meinbio.uni-freiburg.de/what-is-meinbio
Dr. Vincent Schipperges, Postdoc
Member of the Subgroup Molecular Tumor Board
Tel.: 0761 270-84694
vincent.schipperges@uniklinik-freiburg.de
Expertise:
- Data analysis
- Pipeline Development
Affiliation: Member of the SFB 1160 https://www.sfb1160.uni-freiburg.de/
Dr. Andreas Tsouris
Postdoktorand
andreas.tsouris@uniklinik-freiburg.de
Expertise:
- NGS data analysis (DNAseq, RNAseq)
- Pipeline development
- Nanopore sequencing data analysis
Georg Vladimirov
Doktorand
Tel.: 0761 203-9619
georg.vladimirov@uniklinik-freiburg.de
Expertise:
- Molekulare Biologie
- Molekulare Medizin
Gene Editing / RNA-Interferenz
Frederik Voigt
Tel.: 0761 270-84675
Frederik.voigt@uniklinik-freiburg.de
Expertise:
- Databases
- Interface development
Affiliation: Member of the MTB, ZPM, Artificial Intelligence
Geritt Batt, Linux HPC-Cluster Administrator
geritt.batt@uniklinik-freiburg.de
0761 - 270 84687
Expertise:
- Linux HPC
Tom Deak
Linux HPC-Cluster Administrator
Tel.: 0761 270-84684
tom.deak@uniklinik-freiburg.de
Expertise:
- Linux HPC
Jonas Gassenschmidt
Software Developer
Tel.: 0761 270-84655
jonas.gassenschmidt@uniklinik-freiburg.de
Expertise:
- Softwareentwicklung
Georg Kohnke
Software Developer
Tel.: 0761 270-84686
georg.kohnke@uniklinik-freiburg.de
Expertise:
- Software-Architecture
Tanja Werner
Director of the Institute
Institute of Medical Bioinformatics und Systems Medicine (IBSM)
University Hospital Freiburg
Telefon: 0761 270-84671
melanie.boerries@uniklinik-freiburg.de
Assistant to the Director
Miriam von Scheibner
Telefon: 0761 270-84673
ibsm.assistenz@uniklinik-freiburg.de