AI in Biomedicine and Systems Biology
Responsibilities within the Institute
Development of novel AI methods happens in the Small Data Lab. The Research Data Management group leverages AI tools for workflows in biomedical basic research. The division Methods in Clinical Epidemiology combines AI with complex time structures in clinical research.Selected projects
The use of clinical registries on rare diseases for modeling individual latent dynamics via neural networks and stochastic differential equations. A project within CRC Small Data.
Leveraging Large Language Models (LLMs) for automated metadata annotation by incorporating a metadata schema for context and using agentic tool interaction for validation with the PubTator 3.0 database. A project that includes multiple CRCs.
Cell-cell interactions as part of the signalling landscape are reconstructed from single-cell transcriptomics using known ligand-receptor pairs. A project within the EXC CIBSS.